MAGMET is a web system that automatically identifies and quantifies metabolites using 1D ¹H NMR spectra of serum. The NMR spectra must be collected in a standardized fashion (see How To Collect NMR Spectra for MAGMET) for MAGMET to perform optimally. MAGMET first performs all spectral processing steps, including Fourier transformation, phasing, solvent filtering, chemical shift referencing, baseline correction and reference line shape convolution automatically. It then deconvolutes the resulting NMR spectrum using a reference spectral library, which here contains the signatures of more than 60 metabolites (see here for a list). This deconvolution process determines both the identity and quantity of the compounds in the biofluid mixture. Extensive testing shows that MAGMET meets or exceeds the performance of highly trained human experts.